| Selected features |
| HIV-1_5_LTR | | 455 - 635 |  | HIV-1_5_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a |
|
| truncHIV-1_3_LTR | | 455 - 635 |  | truncHIV-1_3_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a |
|
| HIV-1_psi_pack | | 746 - 790 |  | HIV-1_psi_pack |  | | tgagtacgccaaaaattttgactagcggaggctagaaggagagag |
|
| RRE | | 1300 - 1533 |  | RRE |  | aggagctttgttccttgggttcttgggagcagcaggaagcactatgggcgcagcgtcaat gacgctgacggtacaggccagacaattattgtctggtatagtgcagcagcagaacaattt gctgagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatcaagca gctccaggcaagaatcctggctgtggaaagatacctaaaggatcaacagctcct |
|
| Orf frame 2 | | 1178 - 2035 |  | Orf frame 2 |  | atgagggacaattggagaagtgaattatataaatataaagtagtaaaaattgaaccatta ggagtagcacccaccaaggcaaagagaagagtggtgcagagagaaaaaagagcagtggga ataggagctttgttccttgggttcttgggagcagcaggaagcactatgggcgcagcgtca atgacgctgacggtacaggccagacaattattgtctggtatagtgcagcagcagaacaat ttgctgagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatcaag cagctccaggcaagaatcctggctgtggaaagatacctaaaggatcaacagctcctgggg atttggggttgctctggaaaactcatttgcaccactgctgtgccttggaatgctagttgg agtaataaatctctggaacagatttggaatcacacgacctggatggagtgggacagagaa attaacaattacacaagcttaatacactccttaattgaagaatcgcaaaaccagcaagaa aagaatgaacaagaattattggaattagataaatgggcaagtttgtggaattggtttaac ataacaaattggctgtggtatataaaattattcataatgatagtaggaggcttggtaggt ttaagaatagtttttgctgtactttctatagtgaatagagttaggcagggatattcacca ttatcgtttcagacccacctcccaaccccgaggggacccgacaggcccgaaggaatagaa gaagaaggtggagagagagacagagacagatccattcgattagtgaacggatctcgacgg tatcgatgtcgacgataa |
|
| Orf frame 2 | | 3037 - 1997 |  | Orf frame 2 |  | atgaagcgacggctgaggacggaaaggcccttttcctttgtgtgggtgactcacccgccc gctctcccgagcgccgcgtcctccattttgagctccctgcagcagggccgggaagcggcc atctttccgctcacgcaactggtgccgaccgggccagccttgccgcccagggcggggcga tacacggcggcgcgaggccaggcaccagagcaggccggccagcttgagactacccccgtc cgattctcggtggccgcgctcgcaggccccgcctcgccgaacatgtgcgctgggacgcac gggccccgtcgccgcccgcggccccaaaaaccgaaataccagtgtgcagatcttggcccg catttacaagactatcttgccagaaaaaaagcgtcgcagcaggtcatcaaaaattttaaa tggctagagacttatcgaaagcagcgagacaggcgcgaaggtgccaccagattcgcacgc ggcggccccagcgcccaggccaggcctcaactcaagcacgaggcgaaggggctccttaag cgcaaggcctcgaactctcccacccacttccaacccgaagctcgggatcaagaatcacgt actgcagccagtggaagtaattcaaggcacgcaagggccataacccgtaaagaggccagg cccgcgggaaccacacacggcacttacctgtgttctggcggcaaacccgttgcgaaaaag aacgttcacggcgactactgcacttatatacggttctcccccaccctcgggaaaaaggcg gagccagtacacgacatcactttcccagtttaccccgcgccaccttctctaggcaccggt tcaattgccgacccctccccccaacttctcggggactgtgggcgatgtgcgctctgccca ctgacgggcaccggagccaattcccactcctttcaagacctagaaggtccattagctgca aagattcctctctgtttaaaactttatccatctttgcaaagcttatcgtcgacatcgata ccgtcgagatccgttcactaa |
|
| EF1a_promoter | | 2127 - 3297 |  | EF1a_promoter |  | gtgcccgtcagtgggcagagcgcacatcgcccacagtccccgagaagttggggggagggg tcggcaattgaaccggtgcctagagaaggtggcgcggggtaaactgggaaagtgatgtcg tgtactggctccgcctttttcccgagggtgggggagaaccgtatataagtgcagtagtcg ccgtgaacgttctttttcgcaacgggtttgccgccagaacacaggtaagtgccgtgtgtg gttcccgcgggcctggcctctttacgggttatggcccttgcgtgccttgaattacttcca ctggctgcagtacgtgattcttgatcccgagcttcgggttggaagtgggtgggagagttc gaggccttgcgcttaaggagccccttcgcctcgtgcttgagttgaggcctggcctgggcg ctggggccgccgcgtgcgaatctggtggcaccttcgcgcctgtctcgctgctttcgataa gtctctagccatttaaaatttttgatgacctgctgcgacgctttttttctggcaagatag tcttgtaaatgcgggccaagatctgcacactggtatttcggtttttggggccgcgggcgg cgacggggcccgtgcgtcccagcgcacatgttcggcgaggcggggcctgcgagcgcggcc accgagaatcggacgggggtagtctcaagctggccggcctgctctggtgcctggcctcgc gccgccgtgtatcgccccgccctgggcggcaaggctggcccggtcggcaccagttgcgtg agcggaaagatggccgcttcccggccctgctgcagggagctcaaaatggaggacgcggcg ctcgggagagcgggcgggtgagtcacccacacaaaggaaaagggcctttccgtcctcagc cgtcgcttcatgtgactccacggagtaccgggcgccgtccaggcacctcgattagttctc gagcttttggagtacgtcgtctttaggttggggggaggggttttatgcgatggagtttcc ccacactgagtgggtggagactgaagttaggccagcttggcacttgatgtaattctcctt ggaatttgccctttttgagtttggatcttggttcattctcaagcctcagacagtggttca aagtttttttcttccatttcaggtgtcgtga |
|
| EF1a_fwd_primer | | 3245 - 3265 |  | EF1a_fwd_primer |  | | tcaagcctcagacagtggttc |
|
| cPPT | | 3349 - 3364 |  | cPPT |  | | aaaagaaaagggggga |
|
| IRES | | 3516 - 4019 |  | IRES |  | cccccccccctaacgttactggccgaagccgcttggaataaggccggtgtgcgtttgtct atatgttattttccaccatattgccgtcttttggcaatgtgagggcccggaaacctggcc ctgtcttcttgacgagcattcctaggggtctttcccctctcgccaaaggaatgcaaggtc tgttgaatgtcgtgaaggaagcagttcctctggaagcttcttgaagacaaacaacgtctg tagcgaccctttgcaggcagcggaaccccccacctggcgacaggtgcctctgcggccaaa agccacgtgtataagatacacctgcaaaggcggcacaaccccagtgccacgttgtgagtt ggatagttgtggaaagagtcaaatggctctcctcaagcgtattcaacaaggggctgaagg atgcccagaaggtaccccattgtatgggatctgatctggggcctcggtgcacatgcttta catgtgtttagtcgaggttaaaaa |
|
| EGFP_N_primer | | 4148 - 4127 |  | EGFP_N_primer |  | | cgtcgccgtccagctcgaccag |
|
| EGFP | | 4082 - 4798 |  | EGFP |  | atggtgagcaagggcgaggagctgttcaccggggtggtgcccatcctggtcgagctggac ggcgacgtaaacggccacaagttcagcgtgtccggcgagggcgagggcgatgccacctac ggcaagctgaccctgaagttcatctgcaccaccggcaagctgcccgtgccctggcccacc ctcgtgaccaccctgacctacggcgtgcagtgcttcagccgctaccccgaccacatgaag cagcacgacttcttcaagtccgccatgcccgaaggctacgtccaggagcgcaccatcttc ttcaaggacgacggcaactacaagacccgcgccgaggtgaagttcgagggcgacaccctg gtgaaccgcatcgagctgaagggcatcgacttcaaggaggacggcaacatcctggggcac aagctggagtacaactacaacagccacaacgtctatatcatggccgacaagcagaagaac ggcatcaaggtgaacttcaagatccgccacaacatcgaggacggcagcgtgcagctcgcc gaccactaccagcagaacacccccatcggcgacggccccgtgctgctgcccgacaaccac tacctgagcacccagtccgccctgagcaaagaccccaacgagaagcgcgatcacatggtc ctgctggagttcgtgaccgccgccgggatcactctcggcatggacgagctgtacaag |
|
| Orf frame 2 | | 4082 - 4831 |  | Orf frame 2 |  | atggtgagcaagggcgaggagctgttcaccggggtggtgcccatcctggtcgagctggac ggcgacgtaaacggccacaagttcagcgtgtccggcgagggcgagggcgatgccacctac ggcaagctgaccctgaagttcatctgcaccaccggcaagctgcccgtgccctggcccacc ctcgtgaccaccctgacctacggcgtgcagtgcttcagccgctaccccgaccacatgaag cagcacgacttcttcaagtccgccatgcccgaaggctacgtccaggagcgcaccatcttc ttcaaggacgacggcaactacaagacccgcgccgaggtgaagttcgagggcgacaccctg gtgaaccgcatcgagctgaagggcatcgacttcaaggaggacggcaacatcctggggcac aagctggagtacaactacaacagccacaacgtctatatcatggccgacaagcagaagaac ggcatcaaggtgaacttcaagatccgccacaacatcgaggacggcagcgtgcagctcgcc gaccactaccagcagaacacccccatcggcgacggccccgtgctgctgcccgacaaccac tacctgagcacccagtccgccctgagcaaagaccccaacgagaagcgcgatcacatggtc ctgctggagttcgtgaccgccgccgggatcactctcggcatggacgagctgtacaagtcc ggactcagatctcgactagctagtagctag |
|
| EGFP_C_primer | | 4735 - 4756 |  | EGFP_C_primer |  | | catggtcctgctggagttcgtg |
|
| pBluescriptKS_primer | | 4893 - 4877 |  | pBluescriptKS_primer |  | | tcgaggtcgacggtatc |
|
| WPRE | | 4908 - 5500 |  | WPRE |  | tcaacctctggattacaaaatttgtgaaagattgactggtattcttaactatgttgctcc ttttacgctatgtggatacgctgctttaatgcctttgtatcatgctattgcttcccgtat ggctttcattttctcctccttgtataaatcctggttgctgtctctttatgaggagttgtg gcccgttgtcaggcaacgtggcgtggtgtgcactgtgtttgctgacgcaacccccactgg ttggggcattgccaccacctgtcagctcctttccgggactttcgctttccccctccctat tgccacggcggaactcatcgccgcctgccttgcccgctgctggacaggggctcggctgtt gggcactgacaattccgtggtgttgtcggggaagctgacgtcctttccatggctgctcgc ctgtgttgccacctggattctgcgcgggacgtccttctgctacgtcccttcggccctcaa tccagcggaccttccttcccgcggcctgctgccggctctgcggcctcttccgcgtcttcg ccttcgccctcagacgagtcggatctccctttgggccgcctccccgcatcggg |
|
| cPPT | | 5566 - 5581 |  | cPPT |  | | aaaagaaaagggggga |
|
| U3PPT | | 5566 - 5587 |  | U3PPT |  | | aaaagaaaaggggggactggaa |
|
| loxP | | 5638 - 5671 |  | loxP |  | | ataacttcgtatagcatacattatacgaagttat |
|
| HIV-1_5_LTR | | 5691 - 5871 |  | HIV-1_5_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a |
|
| truncHIV-1_3_LTR | | 5691 - 5871 |  | truncHIV-1_3_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a |
|
| Sp6_primer | | 5914 - 5897 |  | Sp6_primer |  | | atttaggtgacactatag |
|
| pBRrevBam_primer | | 6223 - 6204 |  | pBRrevBam_primer |  | | ggtgatgtcggcgatatagg |
|
| tet(564-300) | | 6415 - 6152 |  | tet(564-300) |  | ctctcccttatgcgactcctgcattaggaagcagcccagtagtaggttgaggccgttgag caccgccgccgcaaggaatggtgcatgcaaggagatggcgcccaacagtcccccggccac ggggcctgccaccatacccacgccgaaacaagcgctcatgagcccgaagtggcgagcccg atcttccccatcggtgatgtcggcgatataggcgccagcaaccgcacctgtggcgccggt gatgccggccacgatgcgtccggc |
|
| pGEX_3_primer | | 6556 - 6578 |  | pGEX_3_primer |  | | ccgggagctgcatgtgtcagagg |
|
| AmpR_promoter | | 6737 - 6765 |  | AmpR_promoter |  | | ttcaaatatgtatccgctcatgagacaat |
|
| Orf frame 3 | | 6807 - 7667 |  | Orf frame 3 |  | atgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcct gtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgca cgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgcccc gaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcc cgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttg gttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaatta tgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatc ggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgcctt gatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatg cctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagct tcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgc tcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtct cgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctac acgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcc tcactgattaagcattggtaa |
|
| Ampicillin | | 6807 - 7667 |  | Ampicillin |  | atgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcct gtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgca cgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgcccc gaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcc cgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttg gttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaatta tgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatc ggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgcctt gatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatg cctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagct tcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgc tcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtct cgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctac acgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcc tcactgattaagcattggtaa |
|
| pBR322_origin | | 7822 - 8441 |  | pBR322_origin |  | agatcaaaggatcttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaa aaaaaccaccgctaccagcggtggtttgtttgccggatcaagagctaccaactctttttc cgaaggtaactggcttcagcagagcgcagataccaaatactgtccttctagtgtagccgt agttaggccaccacttcaagaactctgtagcaccgcctacatacctcgctctgctaatcc tgttaccagtggctgctgccagtggcgataagtcgtgtcttaccgggttggactcaagac gatagttaccggataaggcgcagcggtcgggctgaacggggggttcgtgcacacagccca gcttggagcgaacgacctacaccgaactgagatacctacagcgtgagcattgagaaagcg ccacgcttcccgaagggagaaaggcggacaggtatccggtaagcggcagggtcggaacag gagagcgcacgagggagcttccagggggaaacgcctggtatctttatagtcctgtcgggt ttcgccacctctgacttgagcgtcgatttttgtgatgctcgtcaggggggcggagcctat ggaaaaacgccagcaacgcg |
|
| pBABE_3_primer | | 8687 - 8667 |  | pBABE_3_primer |  | | accctaactgacacacattcc |
|
| SV40_enhancer | | 8888 - 8673 |  | SV40_enhancer |  | gagaatgggcggaactgggcggagttaggggcgggatgggcggagttaggggcgggacta tggttgctgactaattgagatgcatgctttgcatacttctgcctgctggggagcctgggg actttccacacctggttgctgactaattgagatgcatgctttgcatacttctgcctgctg gggagcctggggactttccacaccctaactgacaca |
|
| SV40_promoter | | 8685 - 8953 |  | SV40_promoter |  | ggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagcatgcatctcaatt agtcagcaaccaggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagca tgcatctcaattagtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaa ctccgcccagttccgcccattctccgccccatggctgactaattttttttatttatgcag aggccgaggccgcctcggcctctgagcta |
|
| SV40_origin | | 8852 - 8929 |  | SV40_origin |  | atcccgcccctaactccgcccagttccgcccattctccgccccatggctgactaattttt tttatttatgcagaggcc |
|
| SV40_promoter | | 8805 - 9007 |  | SV40_promoter |  | tgcatctcaattagtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaa ctccgcccagttccgcccattctccgccccatggctgactaattttttttatttatgcag aggccgaggccgcctcggcctctgagctattccagaagtagtgaggaggcttttttggag gcctaggcttttgcaaaaagctt |
|
| SV40pro_F_primer | | 8914 - 8933 |  | SV40pro_F_primer |  | | tatttatgcagaggccgagg |
|
| SV40_int | | 10134 - 10149 |  | SV40_int |  | | ggtaaatataaaattt |
|
| SV40_3_splice | | 10155 - 10202 |  | SV40_3_splice |  | | tgtataatgtgttaaactactgattctaattgtttgtgtattttagat |
|
| SV40_PA_terminator | | 10778 - 10909 |  | SV40_PA_terminator |  | ttgtttattgcagcttataatggttacaaataaagcaatagcatcacaaatttcacaaat aaagcatttttttcactgcattctagttgtggtttgtccaaactcatcaatgtatcttat catgtctggatc |
|
| EBV_rev_primer | | 10866 - 10885 |  | EBV_rev_primer |  | | gtggtttgtccaaactcatc |
|